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Nietlispach Group

NMR spectroscopy of membrane proteins
 

Cambridge CS Software

Cambridge CS software can be downloaded here.

Please email dn206@cam.ac.uk if you would like to use our software. A password is required to unpack the software and it is also important for us to keep track of the number of users.

Installation instructions can be found here. Follow the links below for documentation.

For questions related to the software, please contact dn206@cam.ac.uk or mjb218@cam.ac.uk

 

Documentation

Documentation for the Cambridge CS software can be downloaded here

A recent tutorial for the software given at the 2019 EMBO practical course 'Structure, dynamics and function of biomacromolecules by NMR' at the Bayerisches NMR Zentrum, TU Munich, can be downloaded here and is the most up-to-date guide to the software.

 

Publications

Compressed sensing: Reconstruction of non‐uniformly sampled multidimensional NMR data
Mark Bostock and Daniel Nietlispach, Concepts in Magnetic Resonance: Part A (2018) 46A, e21438 (from special issue: Topics in NMR Data Processing)
(doi: 10.1002/cmr.a.21438)

Compressed sensing ℓ1-Norm Minimisation in Multidimensional NMR Spectroscopy.
Mark J. Bostock, Daniel J. Holland and Daniel Nietlispach, from Fast NMR Data Acquisition - Beyond the Fourier Transform (RSC publishing) (2017)
(doi:10.1039/9781782628361-00267)
Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction.
Mark J. Bostock, Daniel J. Holland, Daniel Nietlispach, Journal of Biomolecular NMR (2017) 68, 67-77
(doi:10.1007/s10858-016-0062-9)
Compressed sensing reconstruction of undersampled 3D NOESY spectra: application to large membrane proteins.
Mark J. Bostock, Daniel J. Holland, Daniel Nietlispach, Journal of Biomolecular NMR (2012), 54, 15-32
(doi:10.1007/s10858-012-9643-4)
Fast multidimensional NMR spectroscopy using compressed sensing.
Daniel J. Holland, Mark J. Bostock, Lynn F. Gladden, Daniel Nietlispach, Angewandte Chemie International Edition (2011), 50,6548-6551
(doi:10.1002/anie.201100440)

 

External websites:

Useful websites for NUS and NMR, including other software packages and processing guidelines:

nus@HMS

MddNMR

NESTA-NMR

Non-Uniform Sampling in NMRPipe

NMRbox